Data Analysis Software (Nucleic Acids)
DNASTAR Lasergene SoftwareLasergene sequence analysis software is
a comprehensive suite of tools for sequence assembly, gene discovery,
protein structure prediction, sequence alignment, primer design,
restriction mapping, and much more. Every module includes
built-in internet connectivity and many other features that make
the software so easy to use. Available for Macintosh and Windows,
Lasergene has extensive import/export capabilities for access to
all popular sequence formats. Online sample solutions are
available through the Support link at the DNASTAR website. LSBI Contact: Amanda Cooksey |
Axon GenePix Pro v6.0 and Acuity v4.0 Microarray Analysis SoftwareAxon GenePrix Pro Software offers enhanced support for third party images and will read standard unsigned 16-bit grayscale TIFF images acquired from any scanner. Automated spot finding with improved algorithms and batch analysis accelerates the spot finding process. The GenePix Pro Results (GPR) file calculates up to 108 different measurements for each spot including mean, median, and sum of pixel intensities for both feature and background pixels, ratio of mean and median pixel intensities, signal to noise, etc. Histogram or Scatter Plots of any analysis measurements, including regression and standard deviation lines are also available. After data is extracted, LSBI offers Axon Acuity to continue the data analysis stream. Many normalization methods are available, e.g. on control spots, linear ratio-based or non-linear lowess methods, and Robust Multichip Analysis (RMA) algorithm for Affymetrix arrays, to name a few. Advanced analysis methods like: Hierarchical Clustering, Self-Organizing Maps, K-Means and K-Medians, Gap Statistic, Principal Components Analysis, Gene Shaving and more leads to discovery of new genes and relationships. Significance statistics, t-test, Mann-Whitney, and one way ANOVA for group comparisons are also revealing. Quicklists can be easily saved and color-coded enabling you quickly track multiple sets of substances through all Acuity visualizations. Some useful visualizations are heat maps, dendrograms, and chromosome localization. Acuity also links directly to pathway sites such as KEGG and BioCarta.
GenePix Pro v5.0 User's Guide (v6.0 User's Guide is embedded
in the software) LSBI Contact: Amanda Cooksey |
Quantity One SoftwareQuantity One software is used to image and
quantitatively analyze 1-D electrophoretic gels, dot blots, slot
blots, and colony counts.
Quantity
One v4.4 User's Guide LSBI Contact: Amanda Cooksey |
SoftMax Pro v2.6.1 SoftwareSoftMax Pro Software for absorbance, luminescence, and fluorescence microplate readers give researchers tremendous flexibility in customizing experiment protocols, analyzing and displaying data, and creating meaningful reports.
Softmax Pro User Manual for Lmax LSBI Contact: Amanda Cooksey |
Beacon Designer v4.0Design molecular beacons and TaqMan® probes for robust amplification and fluorescence in real time PCR. LSBI Contact: Amanda Cooksey |
GeneTraffic UnoGeneTraffic Uno is a data management software for single color microarray experiments. Users can use this application to import, visualize, analyze, interpret, and store their Affymetrix GeneChip microarray data in a complete and secure data management environment. Webex is required to view the tutorials. If you do not have Webex please download it from Webex.com. PDF:
GeneTraffic Uno User Manual |
Genetraffic Uno Data Loading LSBI Contact: Amanda Cooksey |
Ariadne Pathway StudioPathway Studio pathways analysis software
helps you... Standard Ariadne Technology Presentation | Pathway Studio training course | Ariadne Webinars LSBI Contact: Amanda Cooksey |